HPC Training

Repository for storing my presentation, TeX and PDF files for HPC Training. Presentation are part of the HPC Training and Workshop Series conducted by High Performance Computing (HPC) at Louisiana State University (LSU) on behalf of LSU and Louisiana Optical Network Initiative (LONI).
I moved to Lehigh University in Sep. 2014 and started a HPC Training Series as part of Lehigh University's LTS Seminar Series.

AutoDock

This tutorial give an introduction to AutoDock and AutoDock tools presented once for the HPC Training Series at LSU on Mar. 28, 2012 ( TeX | PDF )

Chemistry

This tutorial gives a brief introduction to computational chemistry ( TeX | PDF ),

• LONI Workshop at
  • Southern University on Feb. 18, 2011
  • Tulane University on Mar. 25, 2011
  • University of Lousiana, Lafayette on Nov. 9, 2011
• HPC Training Series at LSU on
  • Jul. 6, 2011
  • Nov. 16, 2011

and molecular dyanamics ( TeX | PDF ).

• HPC Training Series at LSU on
  • Apr. 27, 2011
  • Jul. 6, 2011
  • Feb. 8, 2012

C Programming

Repository for storing my presentation, TeX and PDF files for HPC Training on C Programming.

This two part tutorial describes C programming for beginners.

Part I ( TeX	PDF )
and Part II ( TeX	PDF )

Development Tools

Repository for storing my RMD, HTML, TeX and PDF files for seminars on

• Makefiles, Software Installation, and SPACK ( Rmd

  HTML ),

• Containers ( Rmd

  HTML ),

• Debugging and Profiling ( TeX

  PDF ).

Fortran

Repository for storing my presentation, TeX and PDF files for HPC Training on Fortran.

This tutorial describes programming in Fortran 90/95 for beginners ( TeX | PDF ) and intermediate ( TeX | PDF ) users.

• LONI Workshop at LSU on Feb. 14, 2012
• HPC Training Series at LSU on Feb. 19, and Mar. 12, 2014
• HPC Programming Workshop at Lehigh University on June 1-2, 2015, and June 28-30, 2021

Globus

This tutorial provides an overview on how to use globus tools on LONI Supercomputers ( TeX | PDF ).

• LONI Workshop at University of Lousiaiana, Lafayette on Nov. 1, 2010
• HPC Training Series at LSU on Nov. 10, 2010

High Performance Computing

This tutorial provides an overview of High Performance Computing resources available for computational science and engineering research ( TeX | PDF ).

• HPC Training Series at LSU on
  • Jan. 23, 2013
  • Sep. 4, 2013

LaTeX

This tutorial provides an overview of using LaTeX for creating documents ( TeX | PDF ).

• HPC Training Series at
  • LSU on Oct. 30, 2013
  • Lehigh University on Apr. 3, 2017

Powerdot Style File for presentation

• LSU
• Lehigh

Linux

This tutorial provides an introduction to Linux, basic commands and environment. Part 1 ( TeX | PDF ) Part 2 ( TeX | PDF )

• HPC Training Series at LSU on
  • Feb. 6, 2013
  • Sep. 11, 2013
  • Jan. 29, 2014
• LTS Seminar Series at Lehigh University on
  • Feb. 2015
  • Sep. 2016
  • Feb. 2017
  • Sep. 2017
  • Feb. 2018
  • Jun. 2018

GNU Octave

This tutorial provides an introduction to GNU Octave. GNU Octave is a high-level interpreted language, primarily intended for numerical computations. It provides capabilities for the numerical solution of linear and nonlinear problems, and for performing other numerical experiments. It is often viewed as a system for numerical computations with a language that is mostly compatible with Matlab. ( TeX | PDF ).

• HPC Training Series at LSU on
  • Apr. 18, 2012
  • Apr. 10, 2013

OpenACC

This tutorial provides a brief introduction to parallel programming using OpenACC directives. Inspired by the OpenACC workshop conducted by Pittsburgh Supercomputing Center ( TeX | PDF ).

• LONI Workshop at LSU on Jun. 10, 2013
• HPC Training Series at LSU on Mar. 26, 2014
• Parallel Programming Workshop at Lehigh on
  • Jun. 1, 2017
  • Jul. 18, 2018
  • Jul. 14, 2021

OpenMP

This tutorial provides a brief introduction to parallel programming using OpenMP directives ( TeX | PDF ).

• LONI Workshop at LSU on
  • Feb. 16, 2012
  • Jun. 10, 2013
  • Jun. 4, 2014
• Parallel Programming Workshop at Lehigh on
  • May. 31, 2017
  • Jul. 17, 2018
  • Jul 14, 2021

Parallel Programming Concepts

This tutorial introduces parallel programming concepts. ( TeX | PDF)

• Guest Lecture ME413, Lehigh University (Fall 2015)

Python Programming

Repository for storing Jupyter Notebook and sample scripts for HPC Training on Python Programming. (HTML | PDF)

• LTS Seminar Series at Lehigh University on
  • Jul. 2018

Lehigh University Research Computing Resources

Slides for presentation specific to Lehigh University Research Computing and guest lectures for various courses

• Lehigh University Resources (HTML

  RMD)

R Programming

Repository for storing R Markdown and sample scripts for HPC Training on R Programming. (HTML | PDF)

Data Visualization with R

Slides for Data Visualization with R presentation (HTML | RMD)

• LTS Seminar Series at Lehigh University on
  • Apr. 5, 2018
  • Mar. 7, 2019

Shell Scripting

This tutorial covers bash and tcsh shell scripting concepts such as arrays, flow control, command line arguments and functions ( TeX | PDF ). From Fall 2013 onwards, this tutorial is a two part series wherein regex, sed, awk and other file manipulating utilities are covered in the second part ( TeX | PDF ) (HTML | PDF)

• HPC Training Series at LSU on
  • Sep. 26, 2012
  • Feb. 27, 2013
  • Sep. 25 and Oct. 2, 2013
• LTS Seminar Series at Lehigh University in Mar. 2015

User Environment

This tutorial gives an overview of HPC Software Environment at LSU and LONI ( TeX | PDF ).

• 2011 DFT Workshop, Jul. 23, 2011
• HPC Training Series at LSU on
  • Sep. 14, 2011
  • Sep. 12, 2012
• LONI Workshop at
  • University of Louisiana, Lafayette, Nov. 9, 2011
  • Xavier University of Louisiana, Mar. 21, 2012

Contributer

Alex Pacheco
Associate CIO, Advanced Research Computing, NJIT (Aug. 2022 - Present) Manager, Research Computing, Lehigh University (Sep. 2014 - Jul. 2022)
HPC User Services Consultant, LSU & LONI (Aug. 2010 - Sep. 2014)

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This work by Alex Pacheco is licensed under a Creative Commons Attribution-ShareAlike 4.0 International License.